Microarrays for an integrative genomics
Microarrays for an integrative genomics
Microarrays for an integrative genomics
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Price: $1.25 FREE for Members
Type: eBook
Released:
Publisher: The MIT Press
Page Count: 241
Format: djvu
Language: English
ISBN-10: 0262612100
ISBN-13: 9780262612104
User Rating: 4.5000 out of 5 Stars! (2 Votes)

Microarrays for an integrative genomics free


Alvin Kho, Atul J. Butte, Isaac S. Kohane free


Functional genomics—the deconstruction of the genome to determine the biological function of genes and gene interactions—is one of the most fruitful new areas of biology. The growing use of DNA microarrays allows researchers to assess the expression of tens of thousands of genes at a time. This quantitative change has led to qualitative progress in our ability to understand regulatory processes at the cellular level. This book provides a systematic introduction to the use of DNA microarrays as an investigative tool for functional genomics. The presentation is appropriate for readers from biology or bioinformatics. After presenting a framework for the design of microarray-driven functional genomics experiments, the book discusses the foundations for analyzing microarray data sets, genomic data-mining, the creation of standardized nomenclature and data models, clinical applications of functional genomics research, and the future of functional genomics.


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| 4 out of 5 Stars!


A helpful and informative overview

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The authors of this book are very excited about the prospects of the field of functional genomics and DNA microarray technology. Their optimism however is tempered chip' noise, which arises when one probe feature influences another, improper scanning techniques, and manufacturing defects, and `inter-chip' noise, which arises from sample variation. Normalization issues are also discussed. Readers should take particular attention to the discussion on fold calculation and significance because of its connection with statistical analysis and because it sets the tone for the rest of the book. In particular, this discussion leads to the very important topic of dissimilarity and similarity measures. This part of the book is more sophisticated mathematically than what has been encountered so far, dealing for example with the concept of a metric space, which may appear to be somewhat abstract organizing maps.' The authors end the book with their vision of future developments. Naturally they point to further refinements in microarray technology, the need for educating a new generation of bioinformaticists, and the push towards the development of new data mining algorithms. Certainly all of these are important, and one can expect other technological developments to occur in the coming years that may prove superior to microarrays in their application to functional genomics. In addition, and there are indications of this even at the present time, one can expect technologies that fully automate the study of gene expression. This includes the generation of hypotheses that characterize scientific investigation, the development and construction of the experiments themselves, and the analysis of the resulting data.

| 5 out of 5 Stars!


Well written

This is a well written book that gives an overview of the technology of microarrays and their use as investigative tools in functional genomics experiments. I found the technical and analytical descriptions very easy to follow. This is still the only book around that can bring any investigator with little knowledge of molecular biology, data analysis, and/or microarrays up to speed in the field. It is also a good text book for a graduate level course on microarray data analysis.

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